Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs17599575 chr2:128480973 G/A 9.11E-10 177 15.67 12.6 2.2 KM Plot
PAAD rs17600177 chr2:128524807 T/C 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs17615583 chr2:70474497 T/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs17615619 chr2:70518842 C/G 0 177 15.37 17.32 1.03 KM Plot
PAAD rs1763620 chr1:16326021 C/T 1.97E-6 176 3.43 15.53 15.5 KM Plot
PAAD rs1763621 chr1:16325972 G/A 1.97E-6 176 3.43 15.53 15.5 KM Plot
PAAD rs1763627 chr1:16315227 C/G 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs1763630 chr1:16314535 C/T 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs1763632 chr1:16312138 T/C 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs17689987 chr12:53275746 T/C 0 176 15.62 13.47 1.03 KM Plot
PAAD rs17695415 chr2:179035031 C/T 5.93E-10 178 15.95 13.07 2.2 KM Plot
PAAD rs17727308 chr8:72558936 C/T 7.36E-8 175 15.82 12.63 3.17 KM Plot
PAAD rs17756577 chr8:1818019 A/T 7.95E-6 170 16.37 13.03 7.77 KM Plot
PAAD rs17778299 chr2:217919565 C/G 5.79E-5 177 15.97 14.17 7.2 KM Plot
PAAD rs17794940 chr8:72562724 A/T 7.36E-8 175 15.82 12.63 3.17 KM Plot